Each Morgan is different as they say. My 2011 4/4 has apparently never hit the tool tray nor the rubber pad on the diff. It does however hit the the frame on the drivers side.(well it did until fitting Rogers Bump Stops)
You can see the mark on the leaf spring on the general photo thread.
Here
http://www.talkmorgan.com/ubbthreads.php/galleries/555298#Post555298