I found my old photo thread of the 3 zip tonneau cover.
http://www.talkmorgan.com/ubbthreads.php/galleries/446077/1Note that each photo has a caption that describes the process.
It would be possible with a little care to fold the cover back under and tuck it above the hood. The cover, however, is a pretty tight fit and there is not a lot of space.

The 3 zip tonneau cover closed.

Wrap the cover around the door opening, behind the seat, and tuck corner in as shown.

Fold

Roll

Tuck the roll behind the seats and zip up to level with the backs of the seats.

You can just do one side

Roll

Tuck in and zip up.