Dog man, it's part of new Morgan ownership give it a little while and you'll get it sorted and then be back in love with it. What I would say is use it as much as possible to get the problems identified and fixed quickly.
Look at it like a house, it's built by hand, settles on its foundations, and the you get the builder back to fix the cracks. House don't have sub-millimetre tolerances and neither do Morgans. They're to built on laser jigs but on trestles.